VTK  9.0.1
vtkNIFTIImageWriter.h
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1 /*=========================================================================
2 
3  Program: Visualization Toolkit
4  Module: vtkNIFTIImageWriter.h
5 
6  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
7  All rights reserved.
8  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
9 
10  This software is distributed WITHOUT ANY WARRANTY; without even
11  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
12  PURPOSE. See the above copyright notice for more information.
13 
14 =========================================================================*/
33 #ifndef vtkNIFTIImageWriter_h
34 #define vtkNIFTIImageWriter_h
35 
36 #include "vtkIOImageModule.h" // For export macro
37 #include "vtkImageWriter.h"
38 
39 class vtkMatrix4x4;
41 
42 class VTKIOIMAGE_EXPORT vtkNIFTIImageWriter : public vtkImageWriter
43 {
44 public:
46 
49  static vtkNIFTIImageWriter* New();
52 
56  void PrintSelf(ostream& os, vtkIndent indent) override;
57 
59 
65  vtkSetMacro(NIFTIVersion, int);
66  vtkGetMacro(NIFTIVersion, int);
68 
70 
74  vtkSetStringMacro(Description);
75  vtkGetStringMacro(Description);
77 
79 
85  vtkGetMacro(TimeDimension, int);
86  vtkSetMacro(TimeDimension, int);
87  vtkGetMacro(TimeSpacing, double);
88  vtkSetMacro(TimeSpacing, double);
90 
92 
100  vtkSetMacro(RescaleSlope, double);
101  vtkGetMacro(RescaleSlope, double);
102  vtkSetMacro(RescaleIntercept, double);
103  vtkGetMacro(RescaleIntercept, double);
105 
107 
114  vtkGetMacro(PlanarRGB, bool);
115  vtkSetMacro(PlanarRGB, bool);
116  vtkBooleanMacro(PlanarRGB, bool);
118 
120 
125  vtkSetMacro(QFac, double);
126  vtkGetMacro(QFac, double);
128 
136  void SetQFormMatrix(vtkMatrix4x4*);
137  vtkMatrix4x4* GetQFormMatrix() { return this->QFormMatrix; }
138 
146  void SetSFormMatrix(vtkMatrix4x4*);
147  vtkMatrix4x4* GetSFormMatrix() { return this->SFormMatrix; }
148 
150 
157  void SetNIFTIHeader(vtkNIFTIImageHeader* hdr);
158  vtkNIFTIImageHeader* GetNIFTIHeader();
160 
161 protected:
163  ~vtkNIFTIImageWriter() override;
164 
168  int GenerateHeader(vtkInformation* info, bool singleFile);
169 
173  int RequestData(vtkInformation* request, vtkInformationVector** inputVector,
174  vtkInformationVector* outputVector) override;
175 
182  static char* ReplaceExtension(const char* fname, const char* ext1, const char* ext2);
183 
185 
189  double TimeSpacing;
191 
193 
197  double RescaleSlope;
199 
203  double QFac;
204 
206 
212 
216  char* Description;
217 
219 
226 
230  bool PlanarRGB;
231 
232 private:
233  vtkNIFTIImageWriter(const vtkNIFTIImageWriter&) = delete;
234  void operator=(const vtkNIFTIImageWriter&) = delete;
235 };
236 
237 #endif // vtkNIFTIImageWriter_h
vtkImageWriter
Writes images to files.
Definition: vtkImageWriter.h:32
vtkInformationVector
Store zero or more vtkInformation instances.
Definition: vtkInformationVector.h:35
vtkNIFTIImageWriter::QFac
double QFac
Is -1 if VTK slice order is opposite to NIFTI slice order, +1 otherwise.
Definition: vtkNIFTIImageWriter.h:203
vtkNIFTIImageWriter::SFormMatrix
vtkMatrix4x4 * SFormMatrix
Definition: vtkNIFTIImageWriter.h:210
vtkNIFTIImageWriter::TimeSpacing
double TimeSpacing
Definition: vtkNIFTIImageWriter.h:189
vtkNIFTIImageWriter::TimeDimension
int TimeDimension
The size and spacing of the Time dimension to use in the file.
Definition: vtkNIFTIImageWriter.h:188
vtkNIFTIImageWriter::Description
char * Description
A description of how the file was produced.
Definition: vtkNIFTIImageWriter.h:216
vtkNIFTIImageWriter::RescaleSlope
double RescaleSlope
Definition: vtkNIFTIImageWriter.h:197
vtkNIFTIImageHeader
Store NIfTI header information.
Definition: vtkNIFTIImageHeader.h:46
vtkNIFTIImageWriter::GetQFormMatrix
vtkMatrix4x4 * GetQFormMatrix()
Definition: vtkNIFTIImageWriter.h:137
vtkImageWriter.h
vtkNIFTIImageWriter::QFormMatrix
vtkMatrix4x4 * QFormMatrix
The orientation matrices for the NIFTI file.
Definition: vtkNIFTIImageWriter.h:209
vtkIndent
a simple class to control print indentation
Definition: vtkIndent.h:33
vtkMatrix4x4
represent and manipulate 4x4 transformation matrices
Definition: vtkMatrix4x4.h:35
vtkImageWriter::PrintSelf
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
vtkNIFTIImageWriter::OwnHeader
vtkNIFTIImageHeader * OwnHeader
Definition: vtkNIFTIImageWriter.h:223
vtkInformation
Store vtkAlgorithm input/output information.
Definition: vtkInformation.h:73
vtkImageWriter::RequestData
int RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
This is called in response to a REQUEST_DATA request from the executive.
vtkX3D::info
@ info
Definition: vtkX3D.h:382
vtkNIFTIImageWriter::RescaleIntercept
double RescaleIntercept
Information for rescaling data to quantitative units.
Definition: vtkNIFTIImageWriter.h:196
vtkNIFTIImageWriter::PlanarRGB
bool PlanarRGB
Use planar RGB instead of the default (packed).
Definition: vtkNIFTIImageWriter.h:230
vtkImageWriter::New
static vtkImageWriter * New()
vtkNIFTIImageWriter::NIFTIHeader
vtkNIFTIImageHeader * NIFTIHeader
The header information.
Definition: vtkNIFTIImageWriter.h:222
vtkNIFTIImageWriter::NIFTIVersion
int NIFTIVersion
Definition: vtkNIFTIImageWriter.h:224
vtkNIFTIImageWriter
Write NIfTI-1 and NIfTI-2 medical image files.
Definition: vtkNIFTIImageWriter.h:42
vtkNIFTIImageWriter::GetSFormMatrix
vtkMatrix4x4 * GetSFormMatrix()
Definition: vtkNIFTIImageWriter.h:147